Transcript: ENST00000674365.1 SLITRK1-202

Description

SLIT and NTRK like family member 1 [Source:HGNC Symbol;Acc:HGNC:20297]

Gene Synonyms

KIAA1910, LRRC12

Location

Chromosome 13: 83,877,205-83,882,474 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 31 domains and features, is associated with 3522 variant alleles and maps to 264 oligo probes.

Gene

This transcript is a product of gene ENSG00000178235.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000674365.1	SLITRK1-202	4827	696aa	ENSP00000501349.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9464	Q96PX8	NM_001281503.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000377084.3	SLITRK1-201	5189	696aa	ENSP00000366288.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9464	Q96PX8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 4,827 bps, Translation length: 696 residues

MANE

This MANE Select transcript contains ENSP00000501349 and matches to NM_001281503.2 and NP_001268432.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96PX8

CCDS

This transcript is a member of the Human CCDS set: CCDS9464

Version

ENST00000674365.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000674365.1 SLITRK1-202

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Transcript: ENST00000674365.1 SLITRK1-202

Summary

About Us

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