Transcript: ENST00000649591.1 RTL1-201

Description

retrotransposon Gag like 1 [Source:HGNC Symbol;Acc:HGNC:14665]

Gene Synonyms

HUR1, MAR1, MART1, PEG11, SIRH2

Location

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 12537 variant alleles and maps to 169 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000649591.1	RTL1-201	5398	1358aa	ENSP00000497482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53910	A6NKG5	NM_001134888.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 4, Coding exons: 1, Transcript length: 5,398 bps, Translation length: 1,358 residues

MANE

This MANE Select transcript contains ENSP00000497482 and matches to NM_001134888.3 and NP_001128360.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NKG5

CCDS

This transcript is a member of the Human CCDS set: CCDS53910

Version

ENST00000649591.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.