Transcript: ENST00000648326.1 FAM50B-202

Description

family with sequence similarity 50 member B [Source:HGNC Symbol;Acc:HGNC:18789]

Gene Synonyms

D6S2654E, X5L

Location

Chromosome 6: 3,849,373-3,851,317 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 11 domains and features, is associated with 1288 variant alleles and maps to 257 oligo probes.

Gene

This transcript is a product of gene ENSG00000145945.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000648326.1	FAM50B-202	1643	325aa	ENSP00000496837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4487	A0A024QZY3 Q9Y247	NM_012135.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000380274.2	FAM50B-201	1935	325aa	ENSP00000369627.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4487	A0A024QZY3 Q9Y247	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,643 bps, Translation length: 325 residues

MANE

This MANE Select transcript contains ENSP00000496837 and matches to NM_012135.3 and NP_036267.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y247

CCDS

This transcript is a member of the Human CCDS set: CCDS4487

Version

ENST00000648326.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000648326.1 FAM50B-202

Summary

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Transcript: ENST00000648326.1 FAM50B-202

Summary

About Us

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