Transcript: ENST00000646441.1 EFNB2-202

Description

ephrin B2 [Source:HGNC Symbol;Acc:HGNC:3227]

Gene Synonyms

EPLG5, HTK-L, HTKL, LERK5, MGC126226, MGC126227, MGC126228

Location

Chromosome 13: 106,489,745-106,535,662 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 33 domains and features, is associated with 19774 variant alleles and maps to 557 oligo probes.

Gene

This transcript is a product of gene ENSG00000125266.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000646441.1	EFNB2-202	4995	333aa	ENSP00000493716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9507	P52799	NM_004093.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000643990.1	EFNB2-201	3836	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 4,995 bps, Translation length: 333 residues

MANE

This MANE Select transcript contains ENSP00000493716 and matches to NM_004093.4 and NP_004084.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P52799

CCDS

This transcript is a member of the Human CCDS set: CCDS9507

Version

ENST00000646441.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000646441.1 EFNB2-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000646441.1 EFNB2-202

Summary

About Us

Get help

Our sister sites

Follow us