Transcript: ENST00000645831.2 FOXC1-201

Description

forkhead box C1 [Source:HGNC Symbol;Acc:HGNC:3800]

Gene Synonyms

ARA, FKHL7, FREAC3, IGDA, IHG1, IRID1

Location

About this transcript

This transcript has 1 exon, is annotated with 33 domains and features, is associated with 3202 variant alleles and maps to 475 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000645831.2	FOXC1-201	3983	553aa	ENSP00000493906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4473	Q12948 W6CJ52	NM_001453.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 3,983 bps, Translation length: 553 residues

MANE

This MANE Select transcript contains ENSP00000493906 and matches to NM_001453.3 and NP_001444.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12948

CCDS

This transcript is a member of the Human CCDS set: CCDS4473

Version

ENST00000645831.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.