Transcript: ENST00000639673.3 TRIM43B-201

Description

tripartite motif containing 43B [Source:HGNC Symbol;Acc:HGNC:37146]

Location

Chromosome 2: 95,477,008-95,484,754 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 24 domains and features, is associated with 2412 variant alleles and maps to 549 oligo probes.

Gene

This transcript is a product of gene ENSG00000144010.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000639673.3	TRIM43B-201	1650	446aa	ENSP00000492719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS92808	A6NCK2	NM_001164464.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,650 bps, Translation length: 446 residues

MANE

This MANE Select transcript contains ENSP00000492719 and matches to NM_001164464.2 and NP_001157936.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NCK2

CCDS

This transcript is a member of the Human CCDS set: CCDS92808

Transcript Support Level (TSL)

TSL:1

Version

ENST00000639673.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000639673.3 TRIM43B-201

Summary

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Transcript: ENST00000639673.3 TRIM43B-201

Summary

About Us

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