Transcript: ENST00000621673.4 CFC1-203

Description

cripto, FRL-1, cryptic family 1 [Source:HGNC Symbol;Acc:HGNC:18292]

Gene Synonyms

CRYPTIC, HTX2

Location

Chromosome 2: 130,592,168-130,599,575 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 3515 variant alleles and maps to 447 oligo probes.

Gene

This transcript is a product of gene ENSG00000136698.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000259216.6	CFC1-201	1672	223aa	ENSP00000259216.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2162	P0CG37	NM_032545.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000615342.4	CFC1-202	1554	191aa	ENSP00000480526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS74574	A0A087WWV2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000621673.4	CFC1-203	1444	148aa	ENSP00000480843.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS74573	A0A087WX98	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,444 bps, Translation length: 148 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS74573

Transcript Support Level (TSL)

TSL:2

Version

ENST00000621673.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000621673.4 CFC1-203

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Transcript: ENST00000621673.4 CFC1-203

Summary

About Us

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