Transcript: ENST00000618265.5 CD177-203

Description

CD177 molecule [Source:HGNC Symbol;Acc:HGNC:30072]

Gene Synonyms

HNA2A, NB1, PRV1

Location

Chromosome 19: 43,353,686-43,363,172 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 10 domains and features, is associated with 4507 variant alleles and maps to 560 oligo probes.

Gene

This transcript is a product of gene ENSG00000204936.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000618265.5	CD177-203	2195	437aa	ENSP00000479536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62700	A0A087WVM2	NM_020406.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000607855.5	CD177-202	536	139aa	ENSP00000483817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087X113	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000378012.3	CD177-201	1512	145aa	ENSP00000367251.2	Nonsense mediated decay		Q8N6Q3-3	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,195 bps, Translation length: 437 residues

MANE

This MANE Select transcript contains ENSP00000479536 and matches to NM_020406.4 and NP_065139.2

CCDS

This transcript is a member of the Human CCDS set: CCDS62700

Transcript Support Level (TSL)

TSL:1

Version

ENST00000618265.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000618265.5 CD177-203

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Transcript: ENST00000618265.5 CD177-203

Summary

About Us

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