Transcript: ENST00000611905.2 CCL16-205

Description

C-C motif chemokine ligand 16 [Source:HGNC Symbol;Acc:HGNC:10614]

Gene Synonyms

CKB12, HCC-4, LCC-1, LEC, LMC, MTN-1, NCC-4, SCYA16, SCYL4

Location

Chromosome 17: 35,976,499-35,981,497 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 2150 variant alleles and maps to 308 oligo probes.

Gene

This transcript is a product of gene ENSG00000275152.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000611905.2	CCL16-205	1507	120aa	ENSP00000478024.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11303	O15467	NM_004590.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000610493.1	CCL16-204	1634	53aa	ENSP00000478934.1	Nonsense mediated decay		A0A087WUU4	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000613642.4	CCL16-206	687	95aa	ENSP00000478592.1	Nonsense mediated decay		A0A087WUE5	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,507 bps, Translation length: 120 residues

MANE

This MANE Select transcript contains ENSP00000478024 and matches to NM_004590.4 and NP_004581.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15467

CCDS

This transcript is a member of the Human CCDS set: CCDS11303

Transcript Support Level (TSL)

TSL:1

Version

ENST00000611905.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000611905.2 CCL16-205

Summary

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Transcript: ENST00000611905.2 CCL16-205

Summary

About Us

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