Transcript: ENST00000563719.4 PYGO1-202

Description

pygopus family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30256]

Location

Chromosome 15: 55,538,884-55,588,345 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 16 domains and features, is associated with 23890 variant alleles and maps to 398 oligo probes.

Gene

This transcript is a product of gene ENSG00000171016.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000563719.4	PYGO1-202	8861	419aa	ENSP00000457777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS81885	Q9Y3Y4-2	NM_001367806.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000302000.10	PYGO1-201	8488	419aa	ENSP00000302327.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10155	Q9Y3Y4-1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000645724.1	PYGO1-203	2173	419aa	ENSP00000496139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS81885	Q9Y3Y4-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 8,861 bps, Translation length: 419 residues

MANE

This MANE Select transcript contains ENSP00000457777 and matches to NM_001367806.1 and NP_001354735.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y3Y4

CCDS

This transcript is a member of the Human CCDS set: CCDS81885

Transcript Support Level (TSL)

TSL:5

Version

ENST00000563719.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000563719.4 PYGO1-202

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Transcript: ENST00000563719.4 PYGO1-202

Summary

About Us

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