Transcript: ENST00000563496.2 TCF24-201

Description

transcription factor 24 [Source:HGNC Symbol;Acc:HGNC:32275]

Gene Synonyms

BHLHA25

Location

Chromosome 8: 66,946,501-66,962,591 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 12 domains and features, is associated with 7465 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSG00000261787.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000563496.2	TCF24-201	2451	167aa	ENSP00000455444.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59103	Q7RTU0	NM_001193502.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000566129.1	TCF24-202	714	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 2,451 bps, Translation length: 167 residues

MANE

This MANE Select transcript contains ENSP00000455444 and matches to NM_001193502.2 and NP_001180431.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7RTU0

CCDS

This transcript is a member of the Human CCDS set: CCDS59103

Transcript Support Level (TSL)

TSL:5

Version

ENST00000563496.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000563496.2 TCF24-201

Summary

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Transcript: ENST00000563496.2 TCF24-201

Summary

About Us

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