Transcript: ENST00000562295.3 GOLGA8S-201

Description

golgin A8 family member S [Source:HGNC Symbol;Acc:HGNC:44409]

Location

Chromosome 15: 23,354,748-23,368,341 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 21 domains and features, is associated with 7942 variant alleles and maps to 3281 oligo probes.

Gene

This transcript is a product of gene ENSG00000261739.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000562295.3	GOLGA8S-201	5186	638aa	ENSP00000455298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS91964	H3BPF8	NM_001395373.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000604046.1	GOLGA8S-202	4349	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 5,186 bps, Translation length: 638 residues

MANE

This MANE Select transcript contains ENSP00000455298 and matches to NM_001395373.1 and NP_001382302.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: H3BPF8

CCDS

This transcript is a member of the Human CCDS set: CCDS91964

Transcript Support Level (TSL)

TSL:5

Version

ENST00000562295.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000562295.3 GOLGA8S-201

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Transcript: ENST00000562295.3 GOLGA8S-201

Summary

About Us

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