Transcript: ENST00000558307.1 SPATA41-201

Description

spermatogenesis associated 41 [Source:HGNC Symbol;Acc:HGNC:48613]

Gene Synonyms

FLJ42289, HSD47

Location

About this transcript

This transcript has 2 exons, is associated with 2081 variant alleles and maps to 160 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000662214.1	SPATA41-204	3564	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000647665.1	SPATA41-203	4880	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560282.1	SPATA41-202	2072	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000558307.1	SPATA41-201	1252	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,252 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000558307.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.