Transcript: ENST00000556489.4 PROX2-201

Description

prospero homeobox 2 [Source:HGNC Symbol;Acc:HGNC:26715]

Gene Synonyms

FLJ36749

Location

Chromosome 14: 74,853,033-74,876,145 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 16 domains and features, is associated with 9899 variant alleles and maps to 309 oligo probes.

Gene

This transcript is a product of gene ENSG00000119608.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000556489.4	PROX2-201	4438	592aa	ENSP00000451223.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS73663	G3V3G0	NM_001243007.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000673765.1	PROX2-203	3928	365aa	ENSP00000501015.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45136	Q3B8N5-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000619947.1	PROX2-202	550	8aa	ENSP00000478947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0G2JMC2	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 4,438 bps, Translation length: 592 residues

MANE

This MANE Select transcript contains ENSP00000451223 and matches to NM_001243007.2 and NP_001229936.1

CCDS

This transcript is a member of the Human CCDS set: CCDS73663

Transcript Support Level (TSL)

TSL:1

Version

ENST00000556489.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000556489.4 PROX2-201

Summary

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Transcript: ENST00000556489.4 PROX2-201

Summary

About Us

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