Human (GRCh38.p14)
Description

pre-mRNA processing factor 39 [Source:HGNC Symbol;Acc:HGNC:20314]

Gene Synonyms

FLJ11128, FLJ20666

Location
About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 5373 variant alleles and maps to 194 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000355765.11PRPF39-2013532669aaENSP00000348010.6
 
Protein coding
CCDS9682Q86UA1-1 NM_017922.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000553605.1PRPF39-204582140aaENSP00000452428.1
 
Protein coding
G3V5M7 -TSL:3CDS 3' incomplete
ENST00000554081.5PRPF39-205322317aaENSP00000451988.1
 
Nonsense mediated decay
H0YJR1 -TSL:5CDS 5' incomplete
ENST00000424478.5PRPF39-2023174152aaENSP00000390867.1
 
Nonsense mediated decay
F8WB90 -TSL:2
ENST00000554439.5PRPF39-2072982152aaENSP00000451334.1
 
Nonsense mediated decay
F8WB90 -TSL:5
ENST00000554429.5PRPF39-2062977152aaENSP00000451331.1
 
Nonsense mediated decay
F8WB90 -TSL:5
ENST00000557477.1PRPF39-21272490aaENSP00000452516.1
 
Nonsense mediated decay
H0YJY9 -TSL:5CDS 5' incomplete
ENST00000477626.5PRPF39-2033507No protein-
 
Retained intron
--TSL:2
ENST00000554785.1PRPF39-2082121No protein-
 
Retained intron
--TSL:2
ENST00000556353.1PRPF39-209687No protein-
 
Retained intron
--TSL:2
ENST00000556782.5PRPF39-211645No protein-
 
Retained intron
--TSL:2
ENST00000556718.1PRPF39-210499No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 3, Coding exons: 2, Transcript length: 582 bps, Translation length: 140 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

CDS 3' incomplete

Version

ENST00000553605.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.