Transcript: ENST00000535142.5 ZW10-202

Description

zw10 kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13194]

Gene Synonyms

KNTC1AP

Location

Chromosome 11: 113,733,275-113,773,691 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 1 domain and feature, is associated with 16034 variant alleles and maps to 523 oligo probes.

Gene

This transcript is a product of gene ENSG00000086827.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000200135.8	ZW10-201	2873	779aa	ENSP00000200135.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8363	O43264-1	NM_004724.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000535142.5	ZW10-202	2735	672aa	ENSP00000440879.1	Nonsense mediated decay		O43264-2	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000538209.1	ZW10-203	892	135aa	ENSP00000439197.1	Nonsense mediated decay		F5H3C1	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 2,735 bps, Translation length: 672 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43264

Transcript Support Level (TSL)

TSL:2

Version

ENST00000535142.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000535142.5 ZW10-202

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Transcript: ENST00000535142.5 ZW10-202

Summary

About Us

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