Transcript: ENST00000534909.2 OTX2-AS1-201

Description

OTX2 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:43906]

Gene Synonyms

OTX2OS1

Location

Chromosome 14: 56,813,183-56,930,833 forward strand.

About this transcript

This transcript has 4 exons, is associated with 50020 variant alleles and maps to 211 oligo probes.

Gene

This transcript is a product of gene ENSG00000248550.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000554725.1	OTX2-AS1-204	587	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000653425.1	OTX2-AS1-205	2532	No protein	-	lncRNA	-	-
ENST00000534909.2	OTX2-AS1-201	2428	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000554358.1	OTX2-AS1-202	541	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000554428.1	OTX2-AS1-203	389	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,428 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000534909.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000534909.2 OTX2-AS1-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000534909.2 OTX2-AS1-201

Summary

About Us

Get help

Our sister sites

Follow us