Transcript: ENST00000533282.1 FOXR1-203

Description

forkhead box R1 [Source:HGNC Symbol;Acc:HGNC:29980]

Gene Synonyms

DLNB13, FOXN5

Location

Chromosome 11: 118,978,779-118,980,572 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 928 variant alleles and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSG00000176302.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000317011.8	FOXR1-201	1101	292aa	ENSP00000314806.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31688	Q6PIV2-1	NM_181721.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000533282.1	FOXR1-203	409	136aa	ENSP00000432358.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YCU3	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000531539.5	FOXR1-202	1053	206aa	ENSP00000433394.1	Nonsense mediated decay		Q6PIV2-2	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 409 bps, Translation length: 136 residues

Transcript Support Level (TSL)

TSL:2

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000533282.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000533282.1 FOXR1-203

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Transcript: ENST00000533282.1 FOXR1-203

Summary

About Us

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