Transcript: ENST00000522154.2 IRGM-202

Description

immunity related GTPase M [Source:HGNC Symbol;Acc:HGNC:29597]

Gene Synonyms

IFI1, IRGM1, LRG-47, LRG47

Location

Chromosome 5: 150,846,521-150,848,702 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 6 domains and features, is associated with 1553 variant alleles and maps to 104 oligo probes.

Gene

This transcript is a product of gene ENSG00000237693.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000522154.2	IRGM-202	1694	181aa	ENSP00000428220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47313	A1A4Y4	NM_001145805.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000520549.1	IRGM-201	503	71aa	ENSP00000429819.1	Nonsense mediated decay		-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000609660.1	IRGM-203	685	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,694 bps, Translation length: 181 residues

MANE

This MANE Select transcript contains ENSP00000428220 and matches to NM_001145805.2 and NP_001139277.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A1A4Y4

CCDS

This transcript is a member of the Human CCDS set: CCDS47313

Transcript Support Level (TSL)

TSL:1

Version

ENST00000522154.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000522154.2 IRGM-202

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Transcript: ENST00000522154.2 IRGM-202

Summary

About Us

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