Transcript: ENST00000517417.3 PCDHGA1-202

Description

protocadherin gamma subfamily A, 1 [Source:HGNC Symbol;Acc:HGNC:8696]

Gene Synonyms

PCDH-GAMMA-A1

Location

Chromosome 5: 141,330,514-141,512,975 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 59 domains and features, is associated with 97093 variant alleles and maps to 754 oligo probes.

Gene

This transcript is a product of gene ENSG00000204956.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000517417.3	PCDHGA1-202	4769	931aa	ENSP00000431083.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54922	Q9Y5H4-1	NM_018912.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000378105.4	PCDHGA1-201	4069	823aa	ENSP00000367345.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9Y5H4-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 4,769 bps, Translation length: 931 residues

MANE

This MANE Select transcript contains ENSP00000431083 and matches to NM_018912.3 and NP_061735.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5H4

CCDS

This transcript is a member of the Human CCDS set: CCDS54922

Transcript Support Level (TSL)

TSL:1

Version

ENST00000517417.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000517417.3 PCDHGA1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000517417.3 PCDHGA1-202

Summary

About Us

Get help

Our sister sites

Follow us