Transcript: ENST00000489752.1 LNP1-203

Description

leukemia NUP98 fusion partner 1 [Source:HGNC Symbol;Acc:HGNC:28014]

Gene Synonyms

NP3

Location

Chromosome 3: 100,401,611-100,456,301 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 22018 variant alleles and maps to 261 oligo probes.

Gene

This transcript is a product of gene ENSG00000206535.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000383693.8	LNP1-201	1864	178aa	ENSP00000373191.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43120	A1A4G5	NM_001085451.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000489752.1	LNP1-203	1813	191aa	ENSP00000417985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J587	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000466996.5	LNP1-202	1723	56aa	ENSP00000419213.1	Nonsense mediated decay		F8WF60	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,813 bps, Translation length: 191 residues

Transcript Support Level (TSL)

TSL:5

Version

ENST00000489752.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000489752.1 LNP1-203

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Transcript: ENST00000489752.1 LNP1-203

Summary

About Us

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