Transcript: ENST00000485275.2 LRIF1-202

Description

ligand dependent nuclear receptor interacting factor 1 [Source:HGNC Symbol;Acc:HGNC:30299]

Gene Synonyms

C1ORF103, FLJ11269, RIF1

Location

Chromosome 1: 110,947,222-110,963,965 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 8450 variant alleles and maps to 266 oligo probes.

Gene

This transcript is a product of gene ENSG00000121931.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000369763.5	LRIF1-201	3313	769aa	ENSP00000358778.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30800	Q5T3J3-1	NM_018372.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000494675.5	LRIF1-203	1912	233aa	ENSP00000435259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41366	Q5T3J3-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000485275.2	LRIF1-202	1796	233aa	ENSP00000432290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41366	Q5T3J3-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,796 bps, Translation length: 233 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5T3J3

CCDS

This transcript is a member of the Human CCDS set: CCDS41366

Transcript Support Level (TSL)

TSL:2

Version

ENST00000485275.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000485275.2 LRIF1-202

Summary

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Transcript: ENST00000485275.2 LRIF1-202

Summary

About Us

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