Transcript: ENST00000479633.2 ARHGAP19-SLIT1-202

Description

ARHGAP19-SLIT1 readthrough (NMD candidate) [Source:HGNC Symbol;Acc:HGNC:48348]

Location

Chromosome 10: 97,153,046-97,292,637 reverse strand.

About this transcript

This transcript has 15 exons, is associated with 60162 variant alleles and maps to 583 oligo probes.

Gene

This transcript is a product of gene ENSG00000269891.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000479633.2	ARHGAP19-SLIT1-202	1876	517aa	ENSP00000473567.1	Nonsense mediated decay		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000475285.2	ARHGAP19-SLIT1-201	2389	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 15, Coding exons: 13, Transcript length: 1,876 bps, Translation length: 517 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000479633.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000479633.2 ARHGAP19-SLIT1-202

Summary

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Transcript: ENST00000479633.2 ARHGAP19-SLIT1-202

Summary

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