Transcript: ENST00000476151.5

Description

novel protein, POLR2J2-UPK3BL readthrough

Location

About this transcript

This transcript has 9 exons, is annotated with 1 domain and feature, is associated with 12373 variant alleles and maps to 1070 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000476151.5	-	1598	115aa	ENSP00000418603.1	Nonsense mediated decay	CCDS43627	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 9, Coding exons: 4, Transcript length: 1,598 bps, Translation length: 115 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS43627

Transcript Support Level (TSL)

TSL:1

Version

ENST00000476151.5

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.