Transcript: ENST00000468200.2 C12orf40-203

Description

chromosome 12 open reading frame 40 [Source:HGNC Symbol;Acc:HGNC:26846]

Gene Synonyms

FLJ40126

Location

Chromosome 12: 39,626,218-39,908,300 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 1 domain and feature, is associated with 131059 variant alleles and maps to 549 oligo probes.

Gene

This transcript is a product of gene ENSG00000180116.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000324616.9	C12orf40-201	2776	652aa	ENSP00000317671.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41770	Q86WS4-1	NM_001031748.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000405531.7	C12orf40-202	1656	477aa	ENSP00000383897.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS81681	Q86WS4-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000468200.2	C12orf40-203	3061	394aa	ENSP00000473371.1	Nonsense mediated decay		Q86WS4-3	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 19, Coding exons: 7, Transcript length: 3,061 bps, Translation length: 394 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86WS4

Transcript Support Level (TSL)

TSL:1

Version

ENST00000468200.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000468200.2 C12orf40-203

Summary

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Transcript: ENST00000468200.2 C12orf40-203

Summary

About Us

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