Transcript: ENST00000458448.6 LRRD1-203

Description

leucine rich repeats and death domain containing 1 [Source:HGNC Symbol;Acc:HGNC:34300]

Gene Synonyms

IMAGE:4798971

Location

Chromosome 7: 92,144,842-92,179,142 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 74 domains and features, is associated with 14101 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSG00000240720.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000458448.6	LRRD1-203	2839	860aa	ENSP00000405987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55124	A4D1F6-1	NM_001161528.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000343318.9	LRRD1-201	2073	116aa	ENSP00000339642.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94143	A4D1F6-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000437357.1	LRRD1-202	407	59aa	ENSP00000387628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9K0I1	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,839 bps, Translation length: 860 residues

MANE

This MANE Select transcript contains ENSP00000405987 and matches to NM_001161528.2 and NP_001155000.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A4D1F6

CCDS

This transcript is a member of the Human CCDS set: CCDS55124

Transcript Support Level (TSL)

TSL:5

Version

ENST00000458448.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000458448.6 LRRD1-203

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Transcript: ENST00000458448.6 LRRD1-203

Summary

About Us

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