Transcript: ENST00000451711.1 TESHL-202

Description

testicular germ cell expressed HSF2 interacting lncRNA [Source:HGNC Symbol;Acc:HGNC:52740]

Gene Synonyms

DIRC3-AS1, LINC01921

Location

Chromosome 2: 216,868,012-216,869,156 forward strand.

About this transcript

This transcript has 2 exons and maps to 111 oligo probes.

Gene

This transcript is a product of gene ENSG00000223874.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000695932.1	TESHL-212	3527	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666326.1	TESHL-211	5257	No protein	-	lncRNA	-	-
ENST00000695940.1	TESHL-220	4664	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657920.1	TESHL-209	4443	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655995.2	TESHL-206	3115	No protein	-	lncRNA	-	-
ENST00000666026.1	TESHL-210	3078	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000695933.1	TESHL-213	2758	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657418.1	TESHL-208	2310	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838358.1	TESHL-248	2286	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000745093.1	TESHL-225	2091	No protein	-	lncRNA	-	-
ENST00000745095.1	TESHL-227	2059	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000772336.1	TESHL-240	1740	No protein	-	lncRNA	-	-
ENST00000695935.2	TESHL-215	1664	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000695941.1	TESHL-221	1580	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000772335.1	TESHL-239	1558	No protein	-	lncRNA	-	-
ENST00000695939.1	TESHL-219	1446	No protein	-	lncRNA	-	-
ENST00000772331.1	TESHL-235	1210	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000695934.1	TESHL-214	1175	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838366.1	TESHL-256	1143	No protein	-	lncRNA	-	-
ENST00000702642.1	TESHL-222	1142	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000695938.1	TESHL-218	1117	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838371.1	TESHL-261	1102	No protein	-	lncRNA	-	-
ENST00000838369.1	TESHL-259	1093	No protein	-	lncRNA	-	-
ENST00000772330.1	TESHL-234	1087	No protein	-	lncRNA	-	-
ENST00000695937.1	TESHL-217	1063	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838363.1	TESHL-253	1041	No protein	-	lncRNA	-	-
ENST00000745094.1	TESHL-226	1025	No protein	-	lncRNA	-	-
ENST00000838365.1	TESHL-255	895	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838377.1	TESHL-267	873	No protein	-	lncRNA	-	-
ENST00000745098.1	TESHL-230	867	No protein	-	lncRNA	-	-
ENST00000695936.2	TESHL-216	809	No protein	-	lncRNA	-	-
ENST00000838367.1	TESHL-257	785	No protein	-	lncRNA	-	-
ENST00000656038.1	TESHL-207	773	No protein	-	lncRNA	-	-
ENST00000838378.1	TESHL-268	765	No protein	-	lncRNA	-	-
ENST00000745096.1	TESHL-228	744	No protein	-	lncRNA	-	-
ENST00000838364.1	TESHL-254	740	No protein	-	lncRNA	-	-
ENST00000772334.1	TESHL-238	709	No protein	-	lncRNA	-	-
ENST00000745099.1	TESHL-231	697	No protein	-	lncRNA	-	-
ENST00000838356.1	TESHL-246	681	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000745097.1	TESHL-229	673	No protein	-	lncRNA	-	-
ENST00000772332.1	TESHL-236	662	No protein	-	lncRNA	-	-
ENST00000838352.1	TESHL-242	653	No protein	-	lncRNA	-	-
ENST00000838353.1	TESHL-243	647	No protein	-	lncRNA	-	-
ENST00000838368.1	TESHL-258	618	No protein	-	lncRNA	-	-
ENST00000745100.1	TESHL-232	605	No protein	-	lncRNA	-	-
ENST00000772333.1	TESHL-237	605	No protein	-	lncRNA	-	-
ENST00000456163.2	TESHL-204	581	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000452813.1	TESHL-203	557	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000447289.1	TESHL-201	552	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000451711.1	TESHL-202	541	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000715605.1	TESHL-224	534	No protein	-	lncRNA	-	-
ENST00000838372.1	TESHL-262	513	No protein	-	lncRNA	-	-
ENST00000838362.1	TESHL-252	496	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000838374.1	TESHL-264	490	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715604.1	TESHL-223	476	No protein	-	lncRNA	-	-
ENST00000838360.1	TESHL-250	472	No protein	-	lncRNA	-	-
ENST00000745101.1	TESHL-233	465	No protein	-	lncRNA	-	-
ENST00000838379.1	TESHL-269	462	No protein	-	lncRNA	-	-
ENST00000838361.1	TESHL-251	439	No protein	-	lncRNA	-	-
ENST00000838354.1	TESHL-244	427	No protein	-	lncRNA	-	-
ENST00000838373.1	TESHL-263	408	No protein	-	lncRNA	-	-
ENST00000838375.1	TESHL-265	395	No protein	-	lncRNA	-	-
ENST00000607591.1	TESHL-205	394	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000838380.1	TESHL-270	391	No protein	-	lncRNA	-	-
ENST00000838370.1	TESHL-260	386	No protein	-	lncRNA	-	-
ENST00000838381.1	TESHL-271	374	No protein	-	lncRNA	-	-
ENST00000838359.1	TESHL-249	359	No protein	-	lncRNA	-	-
ENST00000838355.1	TESHL-245	339	No protein	-	lncRNA	-	-
ENST00000838357.1	TESHL-247	322	No protein	-	lncRNA	-	-
ENST00000838376.1	TESHL-266	308	No protein	-	lncRNA	-	-
ENST00000838382.1	TESHL-272	301	No protein	-	lncRNA	-	-
ENST00000772337.1	TESHL-241	248	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 541 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000451711.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000451711.1 TESHL-202

Summary

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Transcript: ENST00000451711.1 TESHL-202

Summary

About Us

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