Transcript: ENST00000427494.6 APOBEC3D-202

Description

apolipoprotein B mRNA editing enzyme catalytic subunit 3D [Source:HGNC Symbol;Acc:HGNC:17354]

Gene Synonyms

APOBEC3DE, APOBEC3E, ARP6

Location

Chromosome 22: 39,021,113-39,033,261 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 6759 variant alleles and maps to 334 oligo probes.

Gene

This transcript is a product of gene ENSG00000243811.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000216099.13	APOBEC3D-201	2515	386aa	ENSP00000216099.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46709	B2CML4 Q96AK3	NM_152426.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000427494.6	APOBEC3D-202	1961	202aa	ENSP00000388017.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS87027	Q6ICH2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000622217.3	APOBEC3D-203	591	190aa	ENSP00000480718.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WX48	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,961 bps, Translation length: 202 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS87027

Transcript Support Level (TSL)

TSL:1

Version

ENST00000427494.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000427494.6 APOBEC3D-202

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Transcript: ENST00000427494.6 APOBEC3D-202

Summary

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