Human (GRCh38.p14)
Description

leucine rich repeats and calponin homology domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28637]

Gene Synonyms

MGC4126

About this transcript

This transcript has 21 exons, is annotated with 30 domains and features, is associated with 45793 variant alleles and maps to 833 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000425562.7LRCH3-2037129777aaENSP00000393579.2
 
Protein coding
CCDS93456Q96II8-1 NM_001365715.1MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P2TSL:5
ENST00000438796.6LRCH3-2067394803aaENSP00000399751.2
 
Protein coding
CCDS87193Q96II8-2 -GENCODE basicAPPRIS ALT2TSL:2
ENST00000428136.2LRCH3-2045109803aaENSP00000394763.2
 
Protein coding
CCDS87193Q96II8-2 -GENCODE basicAPPRIS ALT2TSL:5
ENST00000414675.6LRCH3-2022299725aaENSP00000394965.2
 
Protein coding
Q96II8-4 -GENCODE basicAPPRIS ALT2TSL:2
ENST00000334859.8LRCH3-2012258712aaENSP00000334375.4
 
Protein coding
CCDS3330Q96II8-3 -GENCODE basicTSL:1
ENST00000441090.6LRCH3-2072034623aaENSP00000394609.2
 
Protein coding
E9PD99 -GENCODE basicTSL:2
ENST00000433298.5LRCH3-205977214aaENSP00000400164.1
 
Protein coding
H7C1G3 -TSL:5CDS 5' incomplete
ENST00000452660.5LRCH3-209681227aaENSP00000395309.1
 
Protein coding
H7C0J8 -TSL:5CDS 5' and 3' incomplete
ENST00000443727.1LRCH3-20861192aaENSP00000412975.1
 
Nonsense mediated decay
F8WFB5 -TSL:4
ENST00000493726.1LRCH3-218733No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000494069.1LRCH3-219783No protein-
 
Retained intron
--TSL:5
ENST00000466054.1LRCH3-211683No protein-
 
Retained intron
--TSL:2
ENST00000466845.1LRCH3-212662No protein-
 
Retained intron
--TSL:3
ENST00000471667.5LRCH3-213586No protein-
 
Retained intron
--TSL:4
ENST00000483442.5LRCH3-217562No protein-
 
Retained intron
--TSL:4
ENST00000461674.5LRCH3-210537No protein-
 
Retained intron
--TSL:5
ENST00000481048.5LRCH3-216536No protein-
 
Retained intron
--TSL:3
ENST00000473177.1LRCH3-214520No protein-
 
Retained intron
--TSL:4
ENST00000476664.1LRCH3-215227No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 21, Coding exons: 21, Transcript length: 7,129 bps, Translation length: 777 residues

MANE

This MANE Select transcript contains ENSP00000393579 and matches to NM_001365715.1 and NP_001352644.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96II8

CCDS

This transcript is a member of the Human CCDS set: CCDS93456

Transcript Support Level (TSL)

TSL:5

Version

ENST00000425562.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.