Transcript: ENST00000413792.5 PIRAT1-201

Description

PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1 [Source:HGNC Symbol;Acc:HGNC:37459]

Gene Synonyms

LINC00211, NCRNA00211, PIRAT

Location

Chromosome 2: 37,826,247-37,829,432 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 1560 variant alleles and maps to 149 oligo probes.

Gene

This transcript is a product of gene ENSG00000237803.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000655678.1	PIRAT1-204	597	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000655948.1	PIRAT1-205	2098	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413792.5	PIRAT1-201	1923	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000446799.6	PIRAT1-203	1261	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000656652.1	PIRAT1-206	731	No protein	-	lncRNA	-	-
ENST00000659701.1	PIRAT1-207	671	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000667610.1	PIRAT1-208	588	No protein	-	lncRNA	-	-
ENST00000418746.1	PIRAT1-202	551	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,923 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000413792.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000413792.5 PIRAT1-201

Summary

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Transcript: ENST00000413792.5 PIRAT1-201

Summary

About Us

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