Transcript: ENST00000400540.5 LINC00544-201

Description

long intergenic non-protein coding RNA 544 [Source:HGNC Symbol;Acc:HGNC:43679]

Location

Chromosome 13: 29,935,905-29,950,488 forward strand.

About this transcript

This transcript has 6 exons, is associated with 6697 variant alleles and maps to 325 oligo probes.

Gene

This transcript is a product of gene ENSG00000122043.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000400540.5	LINC00544-201	1031	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000692335.1	LINC00544-206	1357	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000662443.1	LINC00544-205	1215	No protein	-	lncRNA	-	-
ENST00000656266.1	LINC00544-203	1090	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000481738.2	LINC00544-202	963	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000658535.1	LINC00544-204	513	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,031 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000400540.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000400540.5 LINC00544-201

Summary

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Transcript: ENST00000400540.5 LINC00544-201

Summary

About Us

Get help

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