Human (GRCh38.p14)
Description

SRY-box transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:11201]

Gene Synonyms

L-SOX5, MGC35153

Location
About this transcript

This transcript has 7 exons, is annotated with 19 domains and features, is associated with 22888 variant alleles and maps to 335 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000451604.7SOX5-2067076763aaENSP00000398273.2
 
Protein coding
CCDS8699P35711-1 NM_006940.6MANE SelectEnsembl CanonicalGENCODE basicAPPRIS ALT1TSL:1
ENST00000646273.1SOX5-2182810642aaENSP00000493866.1
 
Protein coding
CCDS58216P35711-4 -GENCODE basic
ENST00000537393.5SOX5-2132769728aaENSP00000439832.1
 
Protein coding
CCDS81672F5H0I3 -GENCODE basicAPPRIS P4TSL:5
ENST00000545921.5SOX5-2172589753aaENSP00000443520.1
 
Protein coding
CCDS58217P35711-5 -GENCODE basicAPPRIS ALT1TSL:2
ENST00000704299.1SOX5-2222554715aaENSP00000515823.1
 
Protein coding
T2CZM2 -GENCODE basic
ENST00000704296.1SOX5-2191633347aaENSP00000515820.1
 
Protein coding
A0A994J7C0 -GENCODE basic
ENST00000396007.6SOX5-2021379377aaENSP00000379328.2
 
Protein coding
CCDS41761P35711-3 -GENCODE basicTSL:1
ENST00000704300.1SOX5-2231062229aaENSP00000515824.1
 
Protein coding
A0A994J4I4 -CDS 3' incomplete
ENST00000441133.2SOX5-204638128aaENSP00000393240.2
 
Protein coding
G3V0H1 -GENCODE basicTSL:2
ENST00000538083.1SOX5-214617144aaENSP00000441579.1
 
Protein coding
F5GWL1 -TSL:4CDS 3' incomplete
ENST00000536729.2SOX5-210587107aaENSP00000496161.1
 
Protein coding
A0A2R8Y7P3 -TSL:5CDS 3' incomplete
ENST00000446891.7SOX5-20558157aaENSP00000494627.1
 
Protein coding
A0A2R8Y5Q1 -TSL:5CDS 3' incomplete
ENST00000704298.1SOX5-2212809377aaENSP00000515822.1
 
Nonsense mediated decay
A0A994J6X9 --
ENST00000704297.1SOX5-220222584aaENSP00000515821.1
 
Nonsense mediated decay
A0A994J4A9 --
ENST00000367206.7SOX5-2011816509aaENSP00000356174.3
 
Nonsense mediated decay
I3L0A5 -TSL:2
ENST00000538905.1SOX5-215832No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000536850.1SOX5-211606No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000535530.5SOX5-208576No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000456299.2SOX5-207576No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000536629.5SOX5-209570No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000429944.6SOX5-203559No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000542241.5SOX5-216376No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000536911.1SOX5-212855No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,379 bps, Translation length: 377 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35711

CCDS

This transcript is a member of the Human CCDS set: CCDS41761

Transcript Support Level (TSL)

TSL:1

Version

ENST00000396007.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.