Transcript: ENST00000391553.3 RNF208-201

Description

ring finger protein 208 [Source:HGNC Symbol;Acc:HGNC:25420]

Gene Synonyms

DKFZP761H1710

Location

Chromosome 9: 137,220,259-137,222,240 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 1362 variant alleles and maps to 310 oligo probes.

Gene

This transcript is a product of gene ENSG00000212864.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000391553.3	RNF208-201	1732	261aa	ENSP00000375397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7037	Q9H0X6	NM_031297.7	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000392827.2	RNF208-202	1135	261aa	ENSP00000376572.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7037	Q9H0X6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,732 bps, Translation length: 261 residues

MANE

This MANE Select transcript contains ENSP00000375397 and matches to NM_031297.7 and NP_112587.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H0X6

CCDS

This transcript is a member of the Human CCDS set: CCDS7037

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000391553.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000391553.3 RNF208-201

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Transcript: ENST00000391553.3 RNF208-201

Summary

About Us

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