Transcript: ENST00000389078.3 H2AJ-201

Description

H2A.J histone [Source:HGNC Symbol;Acc:HGNC:14456]

Gene Synonyms

FLJ10903, H2AFJ, MGC921

Location

Chromosome 12: 14,774,419-14,775,581 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 7 domains and features, is associated with 714 variant alleles and maps to 190 oligo probes.

Gene

This transcript is a product of gene ENSG00000246705.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000544848.3	H2AJ-203	620	129aa	ENSP00000438553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31752	Q9BTM1-1	NM_177925.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000501744.2	H2AJ-202	3107	92aa	ENSP00000440902.1	Nonsense mediated decay		H0YFX9	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000389078.3	H2AJ-201	785	129aa	ENSP00000373730.3	Nonsense mediated decay	CCDS31752	Q9BTM1-1	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 785 bps, Translation length: 129 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BTM1

CCDS

This transcript is a member of the Human CCDS set: CCDS31752

Transcript Support Level (TSL)

TSL:3

Version

ENST00000389078.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000389078.3 H2AJ-201

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Transcript: ENST00000389078.3 H2AJ-201

Summary

About Us

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