Transcript: ENST00000380184.2 UBQLNL-201

Description

ubiquilin like [Source:HGNC Symbol;Acc:HGNC:28294]

Gene Synonyms

MGC20470, MGC26958

Location

Chromosome 11: 5,514,393-5,516,699 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 13 domains and features, is associated with 1590 variant alleles and maps to 259 oligo probes.

Gene

This transcript is a product of gene ENSG00000175518.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000380184.2	UBQLNL-201	2307	475aa	ENSP00000369531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31385	Q8IYU4-1	NM_145053.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000673910.1	UBQLNL-202	2142	465aa	ENSP00000501246.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A669KBE4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 2,307 bps, Translation length: 475 residues

MANE

This MANE Select transcript contains ENSP00000369531 and matches to NM_145053.5 and NP_659490.4

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IYU4

CCDS

This transcript is a member of the Human CCDS set: CCDS31385

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000380184.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000380184.2 UBQLNL-201

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Transcript: ENST00000380184.2 UBQLNL-201

Summary

About Us

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