Transcript: ENST00000372292.8 SFTPD-201

Description

surfactant protein D [Source:HGNC Symbol;Acc:HGNC:10803]

Gene Synonyms

COLEC7, SFTP4, SP-D

Location

Chromosome 10: 79,937,740-79,949,105 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 122 domains and features, is associated with 4952 variant alleles and maps to 326 oligo probes.

Gene

This transcript is a product of gene ENSG00000133661.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000372292.8	SFTPD-201	1283	375aa	ENSP00000361366.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7362	P35247	NM_003019.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000444384.3	SFTPD-202	659	218aa	ENSP00000394325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T0M2	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000678361.1	SFTPD-203	3718	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000679234.1	SFTPD-204	3639	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,283 bps, Translation length: 375 residues

MANE

This MANE Select transcript contains ENSP00000361366 and matches to NM_003019.5 and NP_003010.4

Uniprot

This transcript corresponds to the following Uniprot identifiers: P35247

CCDS

This transcript is a member of the Human CCDS set: CCDS7362

Transcript Support Level (TSL)

TSL:1

Version

ENST00000372292.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000372292.8 SFTPD-201

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Transcript: ENST00000372292.8 SFTPD-201

Summary

About Us

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