Transcript: ENST00000368602.4 TRAPPC3L-202

Description

trafficking protein particle complex subunit 3L [Source:HGNC Symbol;Acc:HGNC:21090]

Gene Synonyms

BA259P20.2, BET3L, FLJ11180

Location

Chromosome 6: 116,494,989-116,545,684 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 21105 variant alleles and maps to 261 oligo probes.

Gene

This transcript is a product of gene ENSG00000173626.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000368602.4	TRAPPC3L-202	2681	181aa	ENSP00000357591.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47468	Q5T215-1	NM_001139444.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000356128.4	TRAPPC3L-201	2421	97aa	ENSP00000348445.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T215-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000437098.5	TRAPPC3L-203	975	167aa	ENSP00000395769.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A0MSL6	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,681 bps, Translation length: 181 residues

MANE

This MANE Select transcript contains ENSP00000357591 and matches to NM_001139444.3 and NP_001132916.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5T215

CCDS

This transcript is a member of the Human CCDS set: CCDS47468

Transcript Support Level (TSL)

TSL:5

Version

ENST00000368602.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000368602.4 TRAPPC3L-202

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Transcript: ENST00000368602.4 TRAPPC3L-202

Summary

About Us

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