Transcript: ENST00000342584.3 SLC9A3-OT1-201

Description

SLC9A3 3' UTR overlapping transcript 1 [Source:HGNC Symbol;Acc:HGNC:24524]

Gene Synonyms

PP7080

Location

Chromosome 5: 470,510-473,098 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1585 variant alleles and maps to 369 oligo probes.

Gene

This transcript is a product of gene ENSG00000188242.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000510714.1	SLC9A3-OT1-204	601	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000342584.3	SLC9A3-OT1-201	1876	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000510604.1	SLC9A3-OT1-203	859	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000502511.1	SLC9A3-OT1-202	552	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,876 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000342584.3

Type

LncRNA

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000342584.3 SLC9A3-OT1-201

Summary

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Transcript: ENST00000342584.3 SLC9A3-OT1-201

Summary

About Us

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