Human (GRCh38.p14)
Description

beta-1,4-N-acetyl-galactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4117]

Gene Synonyms

BETA1-4GALNAC-T, GALGT, SPG26

Location
About this transcript

This transcript has 11 exons, is annotated with 12 domains and features, is associated with 5263 variant alleles and maps to 534 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000341156.9B4GALNT1-2015368533aaENSP00000341562.4
 
Protein coding
CCDS8950Q00973-1 NM_001478.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000550764.5B4GALNT1-2081967328aaENSP00000450303.1
 
Protein coding
CCDS61171Q00973-3 -GENCODE basicTSL:1
ENST00000418555.6B4GALNT1-2021861478aaENSP00000401601.2
 
Protein coding
CCDS61170Q00973-2 -GENCODE basicTSL:2
ENST00000552350.5B4GALNT1-2131649328aaENSP00000448500.1
 
Protein coding
CCDS61171Q00973-3 -GENCODE basicTSL:4
ENST00000449184.7B4GALNT1-2031633304aaENSP00000473533.1
 
Protein coding
B4DSP5 -GENCODE basicTSL:2
ENST00000548888.5B4GALNT1-206841237aaENSP00000447945.1
 
Protein coding
F8VU35 -TSL:4CDS 3' incomplete
ENST00000551220.1B4GALNT1-210837120aaENSP00000446566.1
 
Protein coding
F8VR44 -TSL:4CDS 3' incomplete
ENST00000547741.1B4GALNT1-204453151aaENSP00000448577.1
 
Protein coding
H0YI57 -TSL:4CDS 5' and 3' incomplete
ENST00000552798.5B4GALNT1-2151945231aaENSP00000447076.1
 
Nonsense mediated decay
F8W1A7 -TSL:5
ENST00000549391.5B4GALNT1-207879127aaENSP00000447750.1
 
Nonsense mediated decay
H0YHT1 -TSL:3CDS 5' incomplete
ENST00000548487.5B4GALNT1-20556281aaENSP00000449534.1
 
Nonsense mediated decay
F8VW33 -TSL:4
ENST00000552219.5B4GALNT1-21250296aaENSP00000448340.1
 
Nonsense mediated decay
F8VSE0 -TSL:3
ENST00000550943.1B4GALNT1-209482No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000553142.5B4GALNT1-2165580No protein-
 
Retained intron
--TSL:2
ENST00000552468.1B4GALNT1-2142538No protein-
 
Retained intron
--TSL:2
ENST00000551925.1B4GALNT1-2111003No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 11, Coding exons: 10, Transcript length: 5,368 bps, Translation length: 533 residues

MANE

This MANE Select transcript contains ENSP00000341562 and matches to NM_001478.5 and NP_001469.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q00973

CCDS

This transcript is a member of the Human CCDS set: CCDS8950

Transcript Support Level (TSL)

TSL:1

Version

ENST00000341156.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.