Transcript: ENST00000338855.6 CATSPER4-201

Description

cation channel sperm associated 4 [Source:HGNC Symbol;Acc:HGNC:23220]

Location

Chromosome 1: 26,190,561-26,201,603 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 19 domains and features, is associated with 5250 variant alleles and maps to 379 oligo probes.

Gene

This transcript is a product of gene ENSG00000188782.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000456354.7	CATSPER4-202	1867	472aa	ENSP00000390423.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30645	Q7RTX7-1	NM_198137.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000338855.6	CATSPER4-201	1516	483aa	ENSP00000341006.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KNU1	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000518899.5	CATSPER4-203	1831	384aa	ENSP00000429464.1	Nonsense mediated decay		Q7RTX7-2	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,516 bps, Translation length: 483 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000338855.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000338855.6 CATSPER4-201

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Transcript: ENST00000338855.6 CATSPER4-201

Summary

About Us

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