Transcript: ENST00000324915.6 SPATA31C2-201

Description

SPATA31 subfamily C member 2 [Source:HGNC Symbol;Acc:HGNC:24508]

Gene Synonyms

DKFZP434M131, FAM75C2

Location

Chromosome 9: 88,129,305-88,138,475 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 26 domains and features, is associated with 6332 variant alleles and maps to 857 oligo probes.

Gene

This transcript is a product of gene ENSG00000177910.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000324915.6	SPATA31C2-201	3761	1134aa	ENSP00000509734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94436	A0A8I5KWQ5	NM_001350978.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000675441.1	SPATA31C2-202	3761	1134aa	ENSP00000509164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94435	B4DYI2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,761 bps, Translation length: 1,134 residues

MANE

This MANE Select transcript contains ENSP00000509734 and matches to NM_001350978.3 and NP_001337907.1

CCDS

This transcript is a member of the Human CCDS set: CCDS94436

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000324915.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000324915.6 SPATA31C2-201

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Transcript: ENST00000324915.6 SPATA31C2-201

Summary

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