Human (GRCh38.p14)
Description

class II major histocompatibility complex transactivator [Source:HGNC Symbol;Acc:HGNC:7067]

Gene Synonyms

C2TA, MHC2TA, NLRA

Location
About this transcript

This transcript has 20 exons, is annotated with 37 domains and features, is associated with 31444 variant alleles and maps to 1067 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000324288.14CIITA-201160611130aaENSP00000316328.8
 
Protein coding
CCDS10544A0A0B4J1S1 NM_000246.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000618327.4CIITA-21446571131aaENSP00000485010.1
 
Protein coding
CCDS73826A0A087X2I7 -GENCODE basicAPPRIS ALT2TSL:2
ENST00000381835.9CIITA-2022344546aaENSP00000371257.5
 
Protein coding
CCDS66943P33076-3 -GENCODE basicTSL:1
ENST00000646979.1CIITA-218153981aaENSP00000496240.1
 
Protein coding
A0A2R8Y7F5 -CDS 5' incomplete
ENST00000637439.1CIITA-216850260aaENSP00000489907.1
 
Protein coding
A0A1B0GU01 -TSL:5CDS 3' incomplete
ENST00000576601.1CIITA-212626177aaENSP00000459608.1
 
Protein coding
I3L2E5 -TSL:4CDS 3' incomplete
ENST00000636238.1CIITA-215498139aaENSP00000490205.1
 
Protein coding
A0A1B0GUQ8 -TSL:5CDS 3' incomplete
ENST00000618207.4CIITA-2132844353aaENSP00000484761.1
 
Nonsense mediated decay
Q29704 -TSL:5
ENST00000644232.1CIITA-217218781aaENSP00000495431.1
 
Nonsense mediated decay
A0A2R8YFU9 -CDS 5' incomplete
ENST00000571186.5CIITA-2051041172aaENSP00000459829.1
 
Nonsense mediated decay
I3L2P7 -TSL:5
ENST00000695879.1CIITA-2202894No protein-
 
Protein coding CDS not defined
---
ENST00000573379.1CIITA-2102147No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000537380.1CIITA-2031062No protein-
 
Protein coding CDS not defined
--TSL:1
ENST00000571545.1CIITA-207567No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000572665.1CIITA-208560No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000570546.5CIITA-2045342No protein-
 
Retained intron
--TSL:2
ENST00000573309.5CIITA-2093366No protein-
 
Retained intron
--TSL:1
ENST00000695878.1CIITA-2192334No protein-
 
Retained intron
---
ENST00000575513.1CIITA-211516No protein-
 
Retained intron
--TSL:2
ENST00000571190.1CIITA-206479No protein-
 
Retained intron
--TSL:NA
Statistics

Exons: 20, Coding exons: 19, Transcript length: 16,061 bps, Translation length: 1,130 residues

MANE

This MANE Select transcript contains ENSP00000316328 and matches to NM_000246.4 and NP_000237.2

CCDS

This transcript is a member of the Human CCDS set: CCDS10544

Transcript Support Level (TSL)

TSL:1

Version

ENST00000324288.14

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.