Human (GRCh38.p14)
Description

VPS39 subunit of HOPS complex [Source:HGNC Symbol;Acc:HGNC:20593]

Gene Synonyms

KIAA0770, VAM6

Location
About this transcript

This transcript has 25 exons, is annotated with 10 domains and features, is associated with 20244 variant alleles and maps to 779 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000318006.10VPS39-2014832875aaENSP00000326534.5
 
Protein coding
CCDS10083Q96JC1-2 NM_015289.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P4TSL:1
ENST00000348544.4VPS39-2022661886aaENSP00000335193.5
 
Protein coding
CCDS73710Q96JC1-1 -GENCODE basicAPPRIS ALT1TSL:1
ENST00000564994.5VPS39-20862947aaENSP00000457325.1
 
Nonsense mediated decay
H3BTU0 -TSL:3CDS 5' incomplete
ENST00000568357.1VPS39-210593No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000563692.1VPS39-207587No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000562258.5VPS39-2054160No protein-
 
Retained intron
--TSL:2
ENST00000614932.1VPS39-2142835No protein-
 
Retained intron
--TSL:NA
ENST00000570062.1VPS39-213842No protein-
 
Retained intron
--TSL:3
ENST00000568029.5VPS39-209791No protein-
 
Retained intron
--TSL:5
ENST00000568755.1VPS39-211581No protein-
 
Retained intron
--TSL:3
ENST00000561797.1VPS39-203545No protein-
 
Retained intron
--TSL:3
ENST00000561818.1VPS39-204537No protein-
 
Retained intron
--TSL:3
ENST00000562662.1VPS39-206526No protein-
 
Retained intron
--TSL:4
ENST00000570023.1VPS39-212337No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 25, Coding exons: 25, Transcript length: 4,832 bps, Translation length: 875 residues

MANE

This MANE Select transcript contains ENSP00000326534 and matches to NM_015289.5 and NP_056104.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96JC1

CCDS

This transcript is a member of the Human CCDS set: CCDS10083

Transcript Support Level (TSL)

TSL:1

Version

ENST00000318006.10

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.