Transcript: ENST00000298786.5 SHLD2-202

Description

shieldin complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:28773]

Gene Synonyms

BA163M19.1, FAM35A, FAM35A1, MGC5560, RINN2

Location

Chromosome 10: 87,095,206-87,191,465 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 3 domains and features, is associated with 37545 variant alleles and maps to 641 oligo probes.

Gene

This transcript is a product of gene ENSG00000122376.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000298786.5	SHLD2-202	3601	904aa	ENSP00000298786.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS81484	Q86V20-2	NM_001330112.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000298784.5	SHLD2-201	3402	835aa	ENSP00000298784.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7383	Q86V20-1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000437629.6	SHLD2-203	969	93aa	ENSP00000475647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQ89	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 3,601 bps, Translation length: 904 residues

MANE

This MANE Select transcript contains ENSP00000298786 and matches to NM_001330112.2 and NP_001317041.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86V20

CCDS

This transcript is a member of the Human CCDS set: CCDS81484

Transcript Support Level (TSL)

TSL:5

Version

ENST00000298786.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000298786.5 SHLD2-202

Summary

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Transcript: ENST00000298786.5 SHLD2-202

Summary

About Us

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