Transcript: ENST00000242261.6 TWIST1-201

Description

twist family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:12428]

Gene Synonyms

ACS3, BHLHA38, BPES2, BPES3, CRS, CRS1, H-TWIST, SCS, TWIST

Location

Chromosome 7: 19,115,468-19,117,636 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 14 domains and features, is associated with 1930 variant alleles and maps to 284 oligo probes.

Gene

This transcript is a product of gene ENSG00000122691.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000242261.6	TWIST1-201	1630	202aa	ENSP00000242261.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5367	Q15672	NM_000474.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000354571.5	TWIST1-202	589	135aa	ENSP00000346582.5	Nonsense mediated decay		H7BY00	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000443687.5	TWIST1-203	527	70aa	ENSP00000416986.1	Nonsense mediated decay		H7C4D7	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,630 bps, Translation length: 202 residues

MANE

This MANE Select transcript contains ENSP00000242261 and matches to NM_000474.4 and NP_000465.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15672

CCDS

This transcript is a member of the Human CCDS set: CCDS5367

Transcript Support Level (TSL)

TSL:1

Version

ENST00000242261.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000242261.6 TWIST1-201

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Transcript: ENST00000242261.6 TWIST1-201

Summary

About Us

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