Transcript: ENST00000232217.6 RBP2-201

Description

retinol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:9920]

Gene Synonyms

CRABP-II, CRBP2, CRBPII, RBPC2

Location

Chromosome 3: 139,452,884-139,476,516 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 220 domains and features, is associated with 9724 variant alleles and maps to 260 oligo probes.

Gene

This transcript is a product of gene ENSG00000114113.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000232217.6	RBP2-201	694	134aa	ENSP00000232217.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3109	P50120	NM_004164.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000511956.1	RBP2-203	489	103aa	ENSP00000424333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RB89	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000506825.1	RBP2-202	180	24aa	ENSP00000421266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGE6	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 694 bps, Translation length: 134 residues

MANE

This MANE Select transcript contains ENSP00000232217 and matches to NM_004164.3 and NP_004155.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: P50120

CCDS

This transcript is a member of the Human CCDS set: CCDS3109

Transcript Support Level (TSL)

TSL:1

Version

ENST00000232217.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000232217.6 RBP2-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000232217.6 RBP2-201

Summary

About Us

Get help

Our sister sites

Follow us