Transcript: ENST00000231721.7 SEMA3G-201

Description

semaphorin 3G [Source:HGNC Symbol;Acc:HGNC:30400]

Gene Synonyms

FLJ00014, SEM2

Location

Chromosome 3: 52,433,035-52,445,103 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 20 domains and features, is associated with 6346 variant alleles and maps to 595 oligo probes.

Gene

This transcript is a product of gene ENSG00000010319.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000231721.7	SEMA3G-201	4993	782aa	ENSP00000231721.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2856	Q9NS98	NM_020163.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000475739.1	SEMA3G-203	616	186aa	ENSP00000419181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JXB2	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465657.1	SEMA3G-202	848	99aa	ENSP00000420291.1	Nonsense mediated decay		H7C5M7	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 4,993 bps, Translation length: 782 residues

MANE

This MANE Select transcript contains ENSP00000231721 and matches to NM_020163.3 and NP_064548.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NS98

CCDS

This transcript is a member of the Human CCDS set: CCDS2856

Transcript Support Level (TSL)

TSL:1

Version

ENST00000231721.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000231721.7 SEMA3G-201

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Transcript: ENST00000231721.7 SEMA3G-201

Summary

About Us

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