Transcript: ENST00000231136.4 PCDHB6-201

Description

protocadherin beta 6 [Source:HGNC Symbol;Acc:HGNC:8691]

Gene Synonyms

PCDH-BETA6

Location

Chromosome 5: 141,150,057-141,153,287 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 51 domains and features, is associated with 2804 variant alleles and maps to 487 oligo probes.

Gene

This transcript is a product of gene ENSG00000113211.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000231136.4	PCDHB6-201	3231	794aa	ENSP00000231136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4248	Q9Y5E3	NM_018939.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000622991.1	PCDHB6-202	2608	658aa	ENSP00000485034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS78067	A0A096LNH7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 3,231 bps, Translation length: 794 residues

MANE

This MANE Select transcript contains ENSP00000231136 and matches to NM_018939.4 and NP_061762.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5E3

CCDS

This transcript is a member of the Human CCDS set: CCDS4248

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000231136.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000231136.4 PCDHB6-201

Summary

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Transcript: ENST00000231136.4 PCDHB6-201

Summary

About Us

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