Transcript: ENST00000216177.9 PNPLA5-201

Description

patatin like phospholipase domain containing 5 [Source:HGNC Symbol;Acc:HGNC:24888]

Gene Synonyms

DJ388M5.4, GS2L

Location

Chromosome 22: 43,879,678-43,892,013 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 8 domains and features, is associated with 6340 variant alleles and maps to 403 oligo probes.

Gene

This transcript is a product of gene ENSG00000100341.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000216177.9	PNPLA5-201	2540	429aa	ENSP00000216177.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14053	Q7Z6Z6-1	NM_138814.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000381198.7	PNPLA5-202	2000	315aa	ENSP00000370595.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54537	Q7Z6Z6-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000438734.1	PNPLA5-203	921	268aa	ENSP00000405732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AHL9	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,540 bps, Translation length: 429 residues

MANE

This MANE Select transcript contains ENSP00000216177 and matches to NM_138814.4 and NP_620169.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z6Z6

CCDS

This transcript is a member of the Human CCDS set: CCDS14053

Transcript Support Level (TSL)

TSL:1

Version

ENST00000216177.9

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000216177.9 PNPLA5-201

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Transcript: ENST00000216177.9 PNPLA5-201

Summary

About Us

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