Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ATG4B ENSSSCG00000032919

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Description

autophagy related 4B cysteine peptidase [Source:VGNC Symbol;Acc:VGNC:95947]

Location

Primary_assembly 15: 140,223,904-140,246,321 forward strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 3 transcripts (splice variants), 210 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000072430.2	ATG4B-202	3321	421aa	ENSSSCP00000060671.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q8U4 A0A8D1WFM0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000058721.3	ATG4B-201	1753	402aa	ENSSSCP00000036414.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZY26 A0A8D1B610	-
ENSSSCT00000047384.3	ATG4B-203	1282	402aa	ENSSSCP00000032525.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZLT5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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